rs52541384 SNP Detail

Summary

• ID
  rs52541384
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAAACA TAATTACTGC
  AAAATTATCA TAGTCTACCT GGAGCAGCCC ACCTCGGCTG ATGACCCTCC TAAATTTAAA
  GCGTTGCCAT TGACGACTTT TTTTTTTTTC AGGGTATTGT ACAGAATCTT CTGGGTACAG
  GGATTGTTGA AAAAAAAATG ACTTAATTCA ATTGTTTTAT GGCTTTAACT GGTTTGGTTT
  K
  GTTTCAGTTT GGTTTGGGAT TTTTGTTTTG TTTTGTTTCA GTTTTTGTTG TTGTTGTTGT
  TGTTGTGTGG GTTTCATTTC AGGTTTTAAA ACTTAAAAAA TAGTATGATG TAGGACCAGG
  GAAATGGCTC CATGGGTAAA GGCACTTGCA CCCAAGCCTG AGATCTGAAT TTTGAACCCA
  GGAATCCACA TGCTGGAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136828259	ENSMUSSNP2385975	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52541384					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290634 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1311 bp upstream
Gm35915	predicted gene, 35915	27 bp downstream
Gm37805	predicted gene, 37805	13 bp downstream
Rr684790	regulatory region 684790	1216 bp distal
Rr684791	regulatory region 684791	297 bp distal
Tssr86547	transcription start site region 86547	1142 bp downstream
Tssr90904	transcription start site region 90904	1462 bp upstream
Tssr90905	transcription start site region 90905	1390 bp upstream
Tssr90906	transcription start site region 90906	1369 bp upstream
Tssr90907	transcription start site region 90907	1342 bp upstream
Tssr90908	transcription start site region 90908	1305 bp upstream
Tssr90909	transcription start site region 90909	1282 bp upstream
Tssr90910	transcription start site region 90910	1248 bp upstream
Tssr90911	transcription start site region 90911	1220 bp upstream
Tssr90912	transcription start site region 90912	802 bp upstream