rs52541179 SNP Detail

Summary

• ID
  rs52541179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131858831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GACAGCCAGG GCTATACAGA GAAACCCTGT CTCGAAAAAC
  AAACAAACAA AAAGTGAACA GGGTTAGATA AAGCCAGGAG GAGTTTGAGG CTATCCTGTT
  Y
  TAAATGGCAA GTTTTAGGGC AACCAAGGCT ACATGATAAG ACCCTGTCTC AAAAAAAAAA
  AAAAAAAAGT AGGTTTTTTT TTTTCCCCCT GGTCTATTCA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147473478	ENSMUSSNP6935708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52541179					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131858831 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr377201	regulatory region 377201	1593 bp downstream
Rr600880	regulatory region 600880	1722 bp distal
Rr600881	regulatory region 600881	807 bp proximal