rs52535647 SNP Detail

Summary

• ID
  rs52535647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127153281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTATGAAT GGAGTCTTAA ATATATATGT ATATTTTTAA
  AGATATATTT TATTTTTATT TATGTGTGTT TTGTATATTA TGTGTTGTTT TTGCAAGCAT
  R
  TGTTCCTGAG TAGAGGTGCC TGCAGAGGGC ACCAGATCCC CTGTGACTAG ACTCAGAGAT
  GGTTATTGGG GGTGAGAACC AAATTCTGGT TCTGGAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147525598	ENSMUSSNP2096314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52535647					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127153281 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397284	regulatory region 397284	327 bp downstream
Rr564492	regulatory region 564492	183 bp distal
Rr564493	regulatory region 564493	15 bp proximal