rs52535195 SNP Detail

Summary

• ID
  rs52535195
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCAGA AGACAATAGC
  AGATGCCTTT CAGGCTGTAT CAGCACACTC CCGGGCAGGT TTCATGCACA GGAATACTGG
  TCAACACTAA ATTGACTCCA TGATTTTTTA TGTGTGCGTG TTTTGGTTTT GTTTTGATAC
  TTTTTAAGTC TTTTTAAAAA TATTCATTTA TTTATTTATT TATACACTGT ACACTATAGC
  S
  GTCTTCAGAC ACTCCAGAAA ATGGCATCAG ATTTCATTAC GGATGGTTGT GAGCCACCAT
  GTGGTTGCTG GGGTTTGAAC TCGGGACCTT TGGAAGAGCA GTCAGCGCTC TTAACCGCTG
  AGCCATCTCA CCAGCTCCCC CCACCTCCAC TTTTTAAGTC TTAATTGGGT TGTTTTTGTT
  TTGATTTTGG GTTTTTGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133241389	ENSMUSSNP1072579	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52535195					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1109 bp distal
Cpgi17484	CpG island 17484	502 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	901 bp upstream
Rr399669	regulatory region 399669	651 bp downstream
Rr631141	regulatory region 631141	954 bp distal
Rr631142	regulatory region 631142	453 bp distal
Tssr61156	transcription start site region 61156	974 bp upstream
Tssr61157	transcription start site region 61157	948 bp upstream
Tssr61158	transcription start site region 61158	922 bp upstream
Tssr61159	transcription start site region 61159	872 bp upstream
Tssr61160	transcription start site region 61160	856 bp upstream