rs52534978 SNP Detail

Summary

• ID
  rs52534978
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156489609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTCCAG AGGTTCTGAG TTCAAATCCC AGCAACCACA
  TGGTGGCTCA CAACCACCTG TAATGAGATC TGACGCCCTC TTCTGGTGTG TCTGAAGACA
  A
  CTACAGTGTA CTTAGATATA ATAGTAAATA AATCTTTTTA AAAAATGATT TCAAAAGCAA
  TAATAAATCA AAAATCTAGA ATGAAGACCT TGAAACATG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145801551	ENSMUSSNP6598307	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52534978					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156489609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr421220	regulatory region 421220			1276 bp distal
Rr421221	regulatory region 421221			795 bp distal
Rr421222	regulatory region 421222			10 bp distal
Tor3a	torsin family 3, member A			Intron
				Noncoding-Transcript-Variant