rs52529959 SNP Detail

Summary

• ID
  rs52529959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:104355212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caggatctt tattatatag atctggctgt
  cctggaactc aaagaaattg acctacctct gccttccctg gaattaaagg catatactac
  cacacctggT CTCACTCGTG TATATTAAAA TAATATTTGG GGtgtgtgtg tgtgtgtgtg
  W
  gagagagaga gagagagaga gagagagagg gagagagagg gagagagaga gagagaggga
  gagagagaga gagagagcat gacaaagaac atagttgcca tggaggccag aacagggtat
  ccaatctcct agaatttcag gtacaggtgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147150240	ENSMUSSNP7021504	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320444801	CHEV_2_104365024	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52529959					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104355212 () rs orientation: forward

Symbol	Name	Function Class
Rr562086	regulatory region 562086	638 bp proximal