rs52529804 SNP Detail

Summary

• ID
  rs52529804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38864199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAGACA TCTGTAGTAT
  ACTAACTAGC TCGTTATTTT GAAGAGCCCA GAAATGTTCT TAAGGTTCCT ATGTGGGGCA
  GAGAGTGACC CACGTGTTCC TCTCCTCCTG GAAAAGGATT ATGTGGTTAT ATATGTGTGT
  GTGGATATAA GTGTGTGGAT ATATATGTAT GTGATAGACT TCTGCCTGCT GCTCCTGTTA
  Y
  CATGTCTTCC TCACCACCAT GGACTGTCCC CCCTTGAACT GAGTCAGAAT AAGCGTATAT
  ATGTGCACAC ATATATATAT ATGAACTTAT AGTGATGTTT GAATTGACAG AAGGAATTGA
  AAATAGCCAA GTGAAGAACT CTAAGTAGAA CCAAGCAGAA AGAACAGAGG TGAGAATGTT
  TGCTGACTGT ATGCAACGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60388587	NES15898494	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs52529804					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388587	NES15898494	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38864199 () rs orientation: forward

Symbol	Name	Function Class
Gm54204	predicted gene, 54204	within coordinates
Rr575706	regulatory region 575706	1783 bp proximal