rs52527837 SNP Detail

Summary

• ID
  rs52527837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154797407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCAAGGA ACCTTCTTTT
  AATGCTATCA GTCATCTCAC TTACAAGTTT GCCTATTTCA AAACAGGGGC TAACAAAGGA
  TAATCATTAC CATCTTCCAT ACTAAGAAGG GGATACAACC AGCCAATCAA CCAACCAACC
  AACCAACAAA CCAATCAACA AAACAAACAA GCAAACATTA CCCTCTAAAA GCAAGTTTTG
  Y
  GAACCAGGGC CCTTAATGTT GCTGGCTGAG AAATTTCAAC TCAAGGATCC ACTCCTTCCA
  GGTTTTTGTT TAGGAATGTG GTCTTTTGTT ATTGTTGCTT ATCATTTTTT TCTTTCCTTT
  TCTTTTGTGG TACTGGGAAA TAACCACAGA GTCCTATGCT TGCCAGCTCT ATCACTGAGC
  TATGTTCATA ATCCTTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360335657	MGP_WTSI_3_154754734	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52527837					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360335657	MGP_WTSI_3_154754734	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154797407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13973	CpG island 13973			1363 bp proximal
Fpgt	fucose-1-phosphate guanylyltransferase			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm26456	predicted gene, 26456			248 bp upstream
Lrriq3	leucine-rich repeats and IQ motif containing 3			1664 bp upstream
Rr398138	regulatory region 398138			1479 bp upstream
Rr587919	regulatory region 587919			907 bp proximal
Rr587920	regulatory region 587920			1623 bp proximal
Rr587921	regulatory region 587921			1829 bp proximal
Tssr32470	transcription start site region 32470			1644 bp upstream
Tssr32471	transcription start site region 32471			1732 bp upstream
Tssr32472	transcription start site region 32472			1789 bp upstream
Tssr32473	transcription start site region 32473			1817 bp upstream
Tssr36281	transcription start site region 36281			617 bp upstream
Tssr36282	transcription start site region 36282			1423 bp downstream
Tssr36283	transcription start site region 36283			1576 bp downstream