rs52525986 SNP Detail

Summary

• ID
  rs52525986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTCTG CTTGGCTTTA
  GGTAATGGTG ATGGCTCCTT TAGTAACCGA AGAACCCTTA GAGTAGAATA TTTGCATCAA
  GCTCAGCTCC CCTCTCAAAG TCCCACCGCA GGCAGCCTTC TGACAGAGAC CTTAGACTCT
  TAGGTCTTGG AAAGCAAAAC AAAACAAAAC AAAACAAAAA AACCCAAAGG TGTTAACGTG
  M
  TGATTGATGT TGGATATCTG GGGACTGCAG CACCTTTTTT GGACCCCATT CAAAAAAAAC
  AAAAAACAAA AAACAAAAAA CAAAACAAAA CAAAACAAAA AAACAAACCC CGACAATCTT
  CAATTTCAGG AAGGTGCCCA TTTTGACAGC CTGAAGTTAT GCAAGAGCAA GGAGCGAGCC
  TGTGAAAGTG TGCCCTGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435444	NES15933264	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		A	A	C	A	A	C	A
ss135676641	ENSMUSSNP2839451	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52525986					SNP	C	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435444	NES15933264	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762978 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	459 bp distal
Gm52613	predicted gene, 52613	1316 bp downstream
Palmd	palmdelphin	342 bp upstream
Rr583817	regulatory region 583817	1052 bp distal
Rr583818	regulatory region 583818	11 bp distal
Tssr35360	transcription start site region 35360	778 bp upstream
Tssr35361	transcription start site region 35361	761 bp upstream
Tssr35362	transcription start site region 35362	696 bp upstream
Tssr35363	transcription start site region 35363	637 bp upstream
Tssr35364	transcription start site region 35364	561 bp upstream
Tssr35365	transcription start site region 35365	540 bp upstream
Tssr35366	transcription start site region 35366	514 bp upstream
Tssr35367	transcription start site region 35367	495 bp upstream
Tssr35368	transcription start site region 35368	391 bp upstream
Tssr35369	transcription start site region 35369	325 bp upstream
Tssr35370	transcription start site region 35370	302 bp upstream
Tssr35371	transcription start site region 35371	185 bp downstream