rs52525469 SNP Detail

Summary

• ID
  rs52525469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59674681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATGAATATGA GTATAACTTA TAAAAATGTT CATGAATATA
  TTCATGTTCA TTAATTTTAA ACTGTATTAA AAAAGTTTTC CCAACAGGGC AAGGAAGAAT
  K
  TATTCATGAA TATATTCATA AGGAGGATAT ATTCATGAAT ATAATCATTA TAGAGAATAT
  ATTCACATTT ATTGAATATG TTCACAAAGA ATATATTCAC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146402934	ENSMUSSNP274465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs52525469					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59674681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
E130308A19Rik	RIKEN cDNA E130308A19 gene			Intron
				Noncoding-Transcript-Variant
Rr593108	regulatory region 593108			629 bp distal
Tssr37444	transcription start site region 37444			668 bp downstream