rs52523959 SNP Detail

Summary

• ID
  rs52523959
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATTTATA AACAACCTAT CAATTCTTTT CCATCTCTTG
  ACAAAAGTCT AGGGTTTTTT TGGTTGGTTG GTTGGTTTTT GGTTTTTCGA GACAGGGTTC
  K
  CTGTTTAGCC CTGGCTGACC TGGAACTCAC TCTGTAGACC AGGCTGGCCT CGAACTCAGA
  AGTCCGTCTG CCTCTGTCTC CCAAGTGCTG AGATTACAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147789092	ENSMUSSNP1934937	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52523959					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1437 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr373996	regulatory region 373996	1323 bp upstream
Rr397362	regulatory region 397362	1750 bp downstream
Rr397363	regulatory region 397363	1085 bp downstream
Rr566426	regulatory region 566426	1851 bp distal
Rr566427	regulatory region 566427	1154 bp distal
Rr566428	regulatory region 566428	1893 bp proximal
Tssr20526	transcription start site region 20526	1853 bp downstream
Tssr20527	transcription start site region 20527	1747 bp downstream
Tssr20528	transcription start site region 20528	1169 bp downstream
Tssr26598	transcription start site region 26598	1955 bp upstream
Tssr26599	transcription start site region 26599	1939 bp upstream