rs52521962 SNP Detail

Summary

• ID
  rs52521962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39452297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGGTAAA AGTGAAGCTT
  CTGAAGGCCT CGGAGTATTG ATGGTGGTAT TCTACCAATG GCTGACTGTG GGCTCCATAC
  TCAGGTGTGG CATTCATTTG CTAAGGGGAA ATCTCTTCAT AAAAGAATCC AGCATGCACC
  CTAAAGAGTG CTCCCCCAAA GAGTACATGC ATTATCTACA AGGGTCTGCC CCAGATCAAT
  Y
  TTTTGTTTTT GTTCTAAACA TATTTTTTCC ATTTTTTATT AGGTATTTAG CTCATTTACA
  TTTCCAATGC TATACCAAAA GTCCCCCATA GCCACCCACC CCCACTCCCC TACCCACCCA
  CTCCCCTTTT TTGGCCCTGG CGTTCCCCTG TACTGGGGCA TATAAAGTTT GCGTGTCCAA
  TGGGCCTCTC TTTCCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60392923	NES15897228	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52521962					SNP	T	T	T	T	T	T	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60392923	NES15897228	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39452297 () rs orientation: forward

Symbol	Name	Function Class
Rr575754	regulatory region 575754	473 bp distal