rs52520952 SNP Detail

Summary

• ID
  rs52520952
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147514787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCA TTGGCAGCCT GAGCCAAAGA
  C
  AATCTCAAAA TAAATGACTA AATTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147959700	ENSMUSSNP4118488	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52520952					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147514787 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1260 bp downstream
Rr398815	regulatory region 398815	819 bp downstream
Rr398816	regulatory region 398816	within coordinates
Rr398817	regulatory region 398817	659 bp upstream
Rr604487	regulatory region 604487	1825 bp proximal