rs52520101 SNP Detail

Summary

• ID
  rs52520101
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCTCCC TCTGCTTGGC
  TTTAGGTAAT GGTGATGGCT CCTTTAGTAA CCGAAGAACC CTTAGAGTAG AATATTTGCA
  TCAAGCTCAG CTCCCCTCTC AAAGTCCCAC CGCAGGCAGC CTTCTGACAG AGACCTTAGA
  CTCTTAGGTC TTGGAAAGCA AAACAAAACA AAACAAAACA AAAAAACCCA AAGGTGTTAA
  S
  GTGATGATTG ATGTTGGATA TCTGGGGACT GCAGCACCTT TTTTGGACCC CATTCAAAAA
  AAACAAAAAA CAAAAAACAA AAAACAAAAC AAAACAAAAC AAAAAAACAA ACCCCGACAA
  TCTTCAATTT CAGGAAGGTG CCCATTTTGA CAGCCTGAAG TTATGCAAGA GCAAGGAGCG
  AGCCTGTGAA AGTGTGCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135676634	ENSMUSSNP3108285	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52520101					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762974 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	455 bp distal
Gm52613	predicted gene, 52613	1312 bp downstream
Palmd	palmdelphin	338 bp upstream
Rr583817	regulatory region 583817	1048 bp distal
Rr583818	regulatory region 583818	7 bp distal
Tssr35360	transcription start site region 35360	774 bp upstream
Tssr35361	transcription start site region 35361	757 bp upstream
Tssr35362	transcription start site region 35362	692 bp upstream
Tssr35363	transcription start site region 35363	633 bp upstream
Tssr35364	transcription start site region 35364	557 bp upstream
Tssr35365	transcription start site region 35365	536 bp upstream
Tssr35366	transcription start site region 35366	510 bp upstream
Tssr35367	transcription start site region 35367	491 bp upstream
Tssr35368	transcription start site region 35368	387 bp upstream
Tssr35369	transcription start site region 35369	321 bp upstream
Tssr35370	transcription start site region 35370	298 bp upstream
Tssr35371	transcription start site region 35371	189 bp downstream