rs52519688 SNP Detail

Summary

• ID
  rs52519688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28751007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GACTCTCAAT ACTGATTCCT GGCCTTCACA CAGAGGAGTA
  CACATATAAC ACATATACAG AGAGACAGAC AGAGAGAGAG AGACAGAGAA TGAATGAATG
  R
  ATGAATGAAT GAATGAGAAG AGATGGGAAA ACGTCAGACT AATTAAACCC AGTTTCCTTC
  CGACCTTCAT GTTCCTGTCA TTTGGCCACC GGTTCTTACA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134715486	ENSMUSSNP3573836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52519688					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28751007 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	1561 bp distal
Rr574616	regulatory region 574616	166 bp distal
Rr574617	regulatory region 574617	910 bp proximal
Rr574618	regulatory region 574618	1056 bp proximal
Rr574619	regulatory region 574619	1485 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	1045 bp upstream
Tssr28652	transcription start site region 28652	1117 bp downstream
Tssr28653	transcription start site region 28653	1043 bp upstream
Tssr28654	transcription start site region 28654	1088 bp upstream