rs52519350 SNP Detail

Summary

• ID
  rs52519350
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAGTGT GTGTGAGTGT
  GTACATGGGG AAGTGCCAGT GCATTGTGTG TGACTGTGTG TATGTGTGAG GAGTGTAGGT
  CTGTGTATTG GTATAAGTGT TTTTTGTGTG CATGTGTGTA ATATTTGACT GTGAGTTGTG
  AGATGGCGTG CATGTGATGT GTGCATATAG AGAGATAGGT GTATGCATGT GTATGAGTCT
  A
  TGTGAGTGTG TGAATTTGTG TGTGCACATG AGTATTCAGA ATGTTTGTGT ATAAAGTAAG
  TGTATGTGAA TGTGTATGAG TGTGTGCATC TGTGTGTTTA TAATGTGTAC ATGTATGTGA
  GAATGTGTAT GAGAGTGTGT GCTCAAACTA TGTGTGAGTA TATGAGTATG TATGTGGGGA
  TATGGAGTAT GTATGTGTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028030	CHEV_3_151766775	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52519350					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1617 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			250 bp downstream
Rr587452	regulatory region 587452			988 bp proximal
Rr587453	regulatory region 587453			1716 bp proximal
Rr587454	regulatory region 587454			1782 bp proximal