rs52518392 SNP Detail

Summary

• ID
  rs52518392
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89284861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TCAGAGGAAG CGTCCACAGC ATCTCCCAGA AGCTCATCTG
  GCTTTGTGGG CCTCCCCTTT CTCCCAGAAC CCCAGGCACC ACTTCGGAAA TCCCTGTCCC
  M
  AAACAAGACC CCTCCCCAGC CTCAGACCCT CCCGACCCCT CCCACTGCCG CCCCCCTCCC
  CCAATAAAGG AACCAAAAGT GGACACAAAT ATGAATCTTA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135474370	ENSMUSSNP1498832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52518392					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89284861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13425	CpG island 13425			892 bp proximal
Dcst2	DC-STAMP domain containing 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr580060	regulatory region 580060			201 bp proximal
Rr580061	regulatory region 580061			916 bp proximal
Zbtb7b	zinc finger and BTB domain containing 7B			92 bp downstream