rs52517746 SNP Detail

Summary

• ID
  rs52517746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130849412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TAGCTTGTGT CTGTATTTTA
  M
  ATTTATTTTA ACATTTGTGT GTGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135903439	ENSMUSSNP4200556	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320967468	CHEV_3_130758681	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52517746					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130849412 () rs orientation: forward

Symbol	Name	Function Class
Gm65588	predicted gene, 65588	within coordinates
Rr375740	regulatory region 375740	1381 bp upstream
Rr585257	regulatory region 585257	656 bp distal
Rr585258	regulatory region 585258	1217 bp proximal