rs52516536 SNP Detail

Summary

• ID
  rs52516536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136134020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTGTGGCCG GGCAGTTGAG ATGCATACCT TTAATCCCAG
  CACTCAGGAG GCAGAGGCAG GTTAATCTCT GTGTTAGGCC AGCCTGGTCC ACAGAGTGAG
  Y
  TCTAGGACAG AGAAATCCTG TCTGGAAAAA ACAACAAACA AACAAACAAA CAAACAAAAC
  ATATTTCTGA AATCATATAA CTCTTACTAC TCTTGAAATG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147567161	ENSMUSSNP3144449	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52516536					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136134020 () rs orientation: forward

Symbol	Name	Function Class
Rr602357	regulatory region 602357	1199 bp proximal