rs52515180 SNP Detail

Summary

• ID
  rs52515180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142984040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGACAG AGCTGTAAGA
  GAAACAAAAG CATTTCCTCA GATTAGGCTG ACGCAGAGCT ATATAGTAAC AGTAAAAATA
  ATGATAAATA ATAATAATGA TAACACAACA GCAACAAAAT AACCAGTTAA TGGGTCTGCC
  TGAATCGGTG AGGGGCAGGC AGGAGAATGA GAACTCCAAG GCTGGCTTCA GTTACACAGA
  R
  AGTTCAAAGC CAGTCTGAGC TACATGAGAC TCTACCAGAG AAAACAAAAA GTAAACAAAC
  AAACAAAAAT AAAACAGAGA AAATAAAACA GAGAAAAGAG AAAGTGACTT TGAGAAAGAG
  AGACACAGAG ACAGAGAGGC AGAGAGAGAC AGACACAGGC ACAGAGACAC AGAGCAAAAC
  AGAGAGACAG AAAGGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147777738	ENSMUSSNP3093539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52515180					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142984040 () rs orientation: forward

Symbol	Name	Function Class
Rr604180	regulatory region 604180	1001 bp proximal
Rr604181	regulatory region 604181	1309 bp proximal