rs52514700 SNP Detail

Summary

• ID
  rs52514700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137710184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGCACA GTGGACGATG
  TTGTACAGGA AGAGAGCCCT GCTTGTAATC CCTGCTCTCT GGAGGAAGAG GCAGAAACAG
  AAGTTTATGT TGATTCTCAC CTACATAGGG GGTTCAGGCC AGTCTGAGCT TCAGTGTGTG
  TATGTGTAGA TATACATTTA CACACACACA CACACACACA CACACAGTCT TAGGGTTTTA
  Y
  ACAACATTTA ATTGGGGCTG GCTTACAAAT TCAGAGGTTC AATCCATTAT CATCAAGGTG
  GGAACATGAC AGCATCCAGA CAGGCATGGT GCAGGAGGAG CTGAGAGTTC TACATCTTCA
  TCTGGAGGCT GCTAGCAGAA TTCTGGCTTC CAGGCAGCTA GGATGAGGCT TATAGCCCAC
  GCCCACAGTG ACTCACCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147628088	ENSMUSSNP6247701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52514700					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137710184 () rs orientation: forward

Symbol	Name	Function Class
Rr602808	regulatory region 602808	632 bp distal
Rr602809	regulatory region 602809	1381 bp proximal