rs52514090 SNP Detail

Summary

• ID
  rs52514090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC ACACGTGTAC ACACAGGGTA
  R
  GTGGGGGTTG TTTTAAATGC ACATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135546310	ENSMUSSNP4275146	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320851744	CHEV_3_101102984	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52514090					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206377 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1565 bp distal
Rr582003	regulatory region 582003	962 bp proximal
Tssr30898	transcription start site region 30898	1555 bp downstream
Tssr30899	transcription start site region 30899	1525 bp downstream
Tssr34787	transcription start site region 34787	1136 bp downstream
Tssr34788	transcription start site region 34788	1173 bp downstream