rs52509615 SNP Detail

Summary

• ID
  rs52509615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9070859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAATTGA AACACTGCTG
  GGGCAGATCC CCATAGCTCC CCAGGCAGGA GCAAAGTTTG CTGGCTGGGC CTCAAAGAAA
  CTATTTAAGG AAGCAGAAGA AGGGGAGCCC AAGTTTGGAG CCAGCCTAGG CTACCAGTGA
  GGGGAGGGAG GAGGAGAGAG GGAGGGAAGG AGAAAGAGGA AGAGGTGGGG GAGAAAGGCC
  R
  TTAGTTTCCC TTTGCCTTTG CACTGACCGG AGCAGTGGAC ATGGTGCAAA TATGAGGAGG
  AAAGGTCAAG AATGGTTGAC ATGGACAAAA AAGCAGAAAG GATCTGGTTG GGAGTGCTGC
  CTTTTACTGG AGAAAAATTA ATGCCAGCTT TGTAGAGTGA TTAATATTTG AGCCCCTGTT
  ACATGGCTGA GGTGCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134571159	ENSMUSSNP8290	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52509615					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9070859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12969	CpG island 12969	928 bp distal
Rr374475	regulatory region 374475	1073 bp downstream
Rr573366	regulatory region 573366	1371 bp distal
Rr573367	regulatory region 573367	586 bp distal
Rr573368	regulatory region 573368	within coordinates
Rr573369	regulatory region 573369	1003 bp proximal
Tpd52	tumor protein D52	1035 bp upstream
Tssr32570	transcription start site region 32570	1943 bp upstream
Tssr32571	transcription start site region 32571	1371 bp upstream
Tssr32572	transcription start site region 32572	1332 bp upstream
Tssr32573	transcription start site region 32573	1284 bp upstream
Tssr32574	transcription start site region 32574	1164 bp upstream
Tssr32575	transcription start site region 32575	1049 bp upstream
Tssr32576	transcription start site region 32576	1028 bp upstream