rs52508526 SNP Detail

Summary

• ID
  rs52508526
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59261601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACCACAGT ACCTAGCAGA TCTTAAAGGT TTCCTCCTGC
  TTTTAGTAAG CATCTACTTT AGATATAAGA ATAATGGTTT TTTGTTTGTT TGTTTGTTGG
  T
  TTTTTTTTTT TTTTTGGTTT TTGCGAGACA GGGTTTCTCT GTATAGCCCT GGCTGTCCTG
  GAGCTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146400908	ENSMUSSNP5544780	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52508526					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59261601 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	1682 bp upstream
Gm68878	predicted gene, 68878	within coordinates
Rr367634	regulatory region 367634	54 bp downstream
Rr398285	regulatory region 398285	346 bp downstream
Rr593020	regulatory region 593020	1540 bp distal
Rr593021	regulatory region 593021	1587 bp distal
Rr593022	regulatory region 593022	73 bp distal
Rr593023	regulatory region 593023	621 bp proximal
Tssr37421	transcription start site region 37421	1548 bp downstream
Tssr37422	transcription start site region 37422	1389 bp upstream