rs52508447 SNP Detail

Summary

• ID
  rs52508447
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36665773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA ACAACAAAAT AGAAAGTTTA
  M
  AGAAATCAAT GTTCTGTTGA ACTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134784731	ENSMUSSNP5128091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320703481	CHEV_3_36510546	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52508447					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36665773 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	1472 bp proximal
Rr575383	regulatory region 575383	997 bp proximal
Rr575384	regulatory region 575384	1651 bp proximal
Rr575385	regulatory region 575385	1804 bp proximal
Tssr28874	transcription start site region 28874	1858 bp upstream
Tssr33039	transcription start site region 33039	1715 bp downstream
Tssr33040	transcription start site region 33040	1746 bp downstream
Tssr33041	transcription start site region 33041	1794 bp downstream
Tssr33042	transcription start site region 33042	1837 bp downstream
Tssr33043	transcription start site region 33043	1865 bp downstream