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rs52508447 SNP Detail
Summary
  • ID
    rs52508447
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:36665773 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAACA ACAACAAAAT AGAAAGTTTA
    M
    AGAAATCAAT GTTCTGTTGA ACTTT                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss134784731 ENSMUSSNP5128091 ENSEMBL ENSEMBL_Sanger f SNP A A
ss320703481 CHEV_3_36510546 CHEVERUD SCREENING_POP f SNP C A
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs52508447 SNP A A C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36665773 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 Intron
Cpgi13088 CpG island 13088 1472 bp proximal
Rr575383 regulatory region 575383 997 bp proximal
Rr575384 regulatory region 575384 1651 bp proximal
Rr575385 regulatory region 575385 1804 bp proximal
Tssr28874 transcription start site region 28874 1858 bp upstream
Tssr33039 transcription start site region 33039 1715 bp downstream
Tssr33040 transcription start site region 33040 1746 bp downstream
Tssr33041 transcription start site region 33041 1794 bp downstream
Tssr33042 transcription start site region 33042 1837 bp downstream
Tssr33043 transcription start site region 33043 1865 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory