rs52505013 SNP Detail

Summary

• ID
  rs52505013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28751034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACACGTA TGGCTTTCAG
  AGTCTCTGAG GTCCTGTCGC AAATAGAGAC AGGATAATAG GGTAATAGAG GAAGACTCTC
  AATACTGATT CCTGGCCTTC ACACAGAGGA GTACACATAT AACACATATA CAGAGAGACA
  GACAGAGAGA GAGAGACAGA GAATGAATGA ATGGATGAAT GAATGAATGA GAAGAGATGG
  K
  AAAACGTCAG ACTAATTAAA CCCAGTTTCC TTCCGACCTT CATGTTCCTG TCATTTGGCC
  ACCGGTTCTT ACATTTCCTC TGCTGTAAAC TGGCTCCATC CAGATGGACT GTGTGGATGG
  CAGTGACCAC AGCTGGCAGT CCCAGGGAAG CTACCCAAAC TTTGGTATCT CCCCCAGTAT
  TTTTGTATCA GATGCCACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134715489	ENSMUSSNP928004	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52505013					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28751034 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	1588 bp distal
Rr574616	regulatory region 574616	193 bp distal
Rr574617	regulatory region 574617	883 bp proximal
Rr574618	regulatory region 574618	1029 bp proximal
Rr574619	regulatory region 574619	1458 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	1018 bp upstream
Tssr28652	transcription start site region 28652	1144 bp downstream
Tssr28653	transcription start site region 28653	1016 bp upstream
Tssr28654	transcription start site region 28654	1061 bp upstream