rs52502526 SNP Detail

Summary

• ID
  rs52502526
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97834162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCAGTG CTCTGGCATT
  GAATATATGA GGACTAGTAT GGCTTGCTGG CTGACAGTGT AGTTCTATGT TCAAAGGGAG
  TCCCTTTCTC AAAGGAATAA GACAGACCAT GATAGAACAG AACACCTGAC ACTTTCCTTT
  GGCTTCCACA TGCATGGGCT CATGTGTACT TGTACACATG TGCTAAGAAG CCCACACATG
  M
  TAAGATATAC ACAAACATGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGTGTGTGT GTGTGTGTGT GTGTGTGTCT TGGCTGTTTG AAAGTTTAAA CTGGCTCAAG
  TTTTCAGATC TTTAATGTTG TAAACCTGAT TACTCTATTA TCCTAAGGTA GGCTTCTTAT
  ATCCAGAGTA TGTAGGAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915474	NES16223121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52502526					SNP	C	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915474	NES16223121	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97834162 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635228	regulatory region 635228	944 bp distal
Rr635229	regulatory region 635229	550 bp distal
Rr635230	regulatory region 635230	470 bp proximal