rs52501795 SNP Detail

Summary

• ID
  rs52501795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18394298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAATCAG ATTGGGAATT
  GGGATCAGAT CTCTTCCAGA GTGGGACTGA GGCCATCTTC TGCCTAGTTA CTGAGTTTGG
  CGCATGGAAC CTACTCCACG AAGAAACTTA CTTACAAAAA AGATAAAAGA CTTGAATTTT
  AGTACCAAAT ATTTCAGAGT TTGTTGGTAA CCTATTAAAA GTGAAATCTT TGGAATACAA
  Y
  TCAAAAACTG TAACTTCAGG TTTCTAGAAG AAGAGAAGAT AGGGGAGGGG AGGGGAGGAG
  AGGGGAGGAG AGGAGAAGGA GAAGGAGAAG GAGTTCAACT ATAGTAAGAA CAAAGATGAG
  ACAGGTACAT TTAGCCTTCT GTGCAAGGCT GACGTAGATT TAAGTTTGGA AAGAAGTAAT
  TCAGTAGAGT AGAAGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60376123	NES15871314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	T	C		T
ss320675038	CHEV_3_18240134	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52501795					SNP	T	T	T	T	T	T	C	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376123	NES15871314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18394298 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	1527 bp downstream
Gm65503	predicted gene, 65503	within coordinates
Rr374602	regulatory region 374602	53 bp downstream
Rr573896	regulatory region 573896	530 bp distal