rs52499808 SNP Detail

Summary

• ID
  rs52499808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21710498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACTAT AAAAACTATC
  CATCAAACTG TGATCCTTCT AGATTGCAAG CTGATGGCAG AAAATCCATG AATAACATAG
  CCACTGAGAC CCTAAGGGAT AGAAATATTA GTTAATAAGT AATCCAGTTT CCGGGTCAGA
  AGAAATTGTT TTGTATACCT CTTGGATTAG CACTCAAGCC AAAAGAAAAA CAGAAAGAAA
  R
  AAAGAAAACC CTCAGATACA AAATCATAAT CAGTCACACA CGCACACACA CACACACACG
  CAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA CAGAGACAGA GAGACAGAGA
  GAGACAGAGA CAGAGACAGA GGCAGAGAGA CAGAGAGAGA CAGAGACAGA GAGAGACGGA
  GAGGGAGAGG GAGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss133070088	ENSMUSSNP4904202	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs52499808					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21710498 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	921 bp distal
Rr627001	regulatory region 627001	1017 bp distal