rs52497077 SNP Detail

Summary

• ID
  rs52497077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148268406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATTTATT TATTTATTTA TTTATTTATT TATTTATTTA
  TTTATTTATT TATTTTTCTT TAGAACTACG CTTGAAGTTG AGTTTTTTTT TTTTTTTTTT
  W
  AATAAATATC TCCTCTGGTC TTAGGCCCCT TTCCCGCCAC CATGTGGCTG GGTCCCTGGA
  CTTTTCCTCT GTGAACCTTC TGTAATGACA GTTACCTAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147995367	ENSMUSSNP6636285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321417870	CHEV_4_147558058	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52497077					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148268406 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	within coordinates
Rr604623	regulatory region 604623	917 bp distal
Rr604624	regulatory region 604624	422 bp proximal