rs52495394 SNP Detail

Summary

• ID
  rs52495394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124068952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAAAAC CAGCTCCTGT
  TTCCCTGGGG TTTCCAGCCG CGATTGCAAA TGCGGTTCCT GGAGCTACAT TGCCCCCATG
  CGACCGAACA GGAGAACGGC ACAAAAAATG AAACCTTTGG TTTTTGTGTT TGTTTGTTTG
  TTTGTTTGTT TTTAGATATT TTCTTTATTT ACATTTCAAA TGTTTTTCCC TTTCCTGATT
  Y
  CCCTTCCGAA AATCCCTATC CCATCCCACT CCCCTTGCTC ACCTCCAAAC CCACTCCCAC
  TTCCTGGCCC TGGCATTCCC CTACACTGGG GCATTGAGCC TTCACAGGAC CAAGGACCTC
  TCCTCCCATT GATGACCGAC TAGGCCATCC TCTGCTACAT ATGCAGCTGG AGCCATGGGT
  CCCTCCATGT GTGCTCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss135783768	ENSMUSSNP4984125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320926859	CHEV_3_123978221	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs52495394					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124068952 () rs orientation: forward

Symbol	Name	Function Class
Gm43731	predicted gene 43731	within coordinates
Rr584584	regulatory region 584584	1943 bp distal
Rr584585	regulatory region 584585	25 bp distal