rs52494453 SNP Detail

Summary

• ID
  rs52494453
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGCTCC GTTGGCCCAG
  TAGTTAGGCT GTGTCTTGCT GCGTTGTTCC TATCCCTCTC TGGAGCAGTT TGGCAGTGAC
  GCCACCAGGT CTGGATAGCA TTCTCTTGGG CTTAGAGATG AAGGCTGTGG AGTGGCGCGC
  GCACACACAC ACACACACAC ACACACGCAC ACACACGCAC ACGCGCACGC GCACACGCGC
  G
  CGCGCACACA CACACGCGCG CGCGCACACA CACACGCGCG TACACACACA CAGAGAAGAA
  TAATCTTGGC TACTCTTTTT ATTCATCCCT GCTTTATGCT AGCCTTCCTG GCTGGGCCAG
  GATTGGTTTT ATCTACAAGC TGCCTTTCTG TGCCATGCTT GGGGTAGGCC GTGGGGAGGG
  TGTGTTAGGC TGTAGGTTAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss363609385	MGP_WTSI_4_147541006	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs52494453					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363609385	MGP_WTSI_4_147541006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15296	CpG island 15296	1813 bp distal
Cpgi15297	CpG island 15297	within coordinates
Fbxo2	F-box protein 2	473 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	350 bp proximal
Rr604612	regulatory region 604612	1323 bp proximal
Rr604613	regulatory region 604613	1355 bp proximal
Rr604614	regulatory region 604614	1580 bp proximal
Tssr44601	transcription start site region 44601	524 bp upstream