rs52492217 SNP Detail

Summary

• ID
  rs52492217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96454792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA TCTTGATGAT TTAAAGAAGA
  R
  TTTTAAAATA TTTTCTTTAA ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135516722	ENSMUSSNP7049204	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320842013	CHEV_3_96351399	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52492217					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96454792 () rs orientation: forward

Symbol	Name	Function Class
Rr397861	regulatory region 397861	within coordinates
Rr581313	regulatory region 581313	1700 bp distal
Rr581314	regulatory region 581314	within coordinates
Rr581315	regulatory region 581315	73 bp proximal
Rr581316	regulatory region 581316	1956 bp proximal