rs52490340 SNP Detail

Summary

• ID
  rs52490340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109335662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAAAG CAGGCAGATC
  TCTGAGAGTT CGAGGCCAGT CTGGTCTGTA ATACAAGTTC CAGAACAGCC AAGACTAAGC
  AAAGAAACCC TGTCCTGAAA ACCAAAAAAA GAAAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAAGAGAG AAAGAGAGAA GGGTGTTGTT GAATGCCTGT AATTCAAGCA
  Y
  TTAGAGCCAA GACAGGAACA TGTCTAGTTC AAGGCTAGCC AATGTTACTT AACAAGCAAA
  CAAACAATTC TGCCTCAAAA AAAGTCTATA TTCAATCAAA CAAAAAAATT TTTTTTTTGA
  AATAGCATCT CACTATATAG CTCTGGCTGT CCTGGAACTC CCTACGTAGA CCAGACTAGC
  CTCAAACTCA GAGGTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147197979	ENSMUSSNP658973	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52490340					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109335662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	1447 bp distal
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	1054 bp distal
Rr597333	regulatory region 597333	1615 bp distal
Tssr42765	transcription start site region 42765	1988 bp upstream
Tssr42766	transcription start site region 42766	1969 bp upstream
Tssr42767	transcription start site region 42767	1857 bp upstream
Tssr42768	transcription start site region 42768	1800 bp upstream
Tssr42769	transcription start site region 42769	1738 bp upstream