rs52489830 SNP Detail

Summary

• ID
  rs52489830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121311394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC TCTTCTGGTG TGTCTAAAGA
  Y
  AGCTACAGTG TACTCATATT AAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147387551	ENSMUSSNP59383	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320483318	CHEV_2_121306649	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52489830					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121311394 () rs orientation: forward

Symbol	Name	Function Class
Gm14017	predicted gene 14017	216 bp upstream
Gm75774	predicted gene, 75774	within coordinates
Rr563835	regulatory region 563835	200 bp distal
Rr563836	regulatory region 563836	8 bp distal