rs52484842 SNP Detail

Summary

• ID
  rs52484842
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117273619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGGTGGTC TTTATGGACT AGAAGGGGAG AACCGACCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TACCTCTCTC TCTCTCTCTC TCTCTCTCTC
  T
  CACACACACA CACACACCAC ACAAGTGTAT GAAAAAGGGC TAAGCTGATA TTCCAGCATA
  AAGTGAGGAG GGGCTCACAA GCCTCCATCC CATCTGATT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147288206	ENSMUSSNP5416710	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52484842					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117273619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377058	regulatory region 377058			148 bp downstream
Rr598144	regulatory region 598144			257 bp distal
Rr598145	regulatory region 598145			519 bp distal
Rr598146	regulatory region 598146			491 bp proximal