rs52483579 SNP Detail

Summary

• ID
  rs52483579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30074117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGGTTTTTT TTGTTTCTCT CTCTCCTCGC TCTCTTGCTC
  TCTCTCTCTT TCTCTCTCTT TCACTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  K
  CTCTCTCTCT CTCGCTCTCT CGCTCTCTCG CTCTCGCTCT GCTTCCCTGG AAGATGTCTG
  TCCATGTCTG GCATGCACCT GAGCTTCTCC ATTCCCATTT A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134728282	ENSMUSSNP3323742	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52483579					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30074117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			within coordinates
Rr574707	regulatory region 574707			1336 bp distal
Rr574708	regulatory region 574708			130 bp distal
Rr574709	regulatory region 574709			82 bp proximal