rs52481480 SNP Detail

Summary

• ID
  rs52481480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100456431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTTTTATTT AGGCCTTTGG CCTTCTGTTT AGGAAAATGT
  CACTAGCACT GCCATTGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTATCTTTCC CTGTTGAGCT ACCTCACTCA CTTGTTTTGT
  TTGCTAAGCC TGGGTCTTAC CATGTAGCCC CTGGTGGTAC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135540183	ENSMUSSNP3218970	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52481480					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100456431 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	930 bp distal
Rr581871	regulatory region 581871	1282 bp distal
Rr581872	regulatory region 581872	1672 bp proximal