rs52478950 SNP Detail

Summary

• ID
  rs52478950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51916529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTAG TGTGTGATGT
  GGTGTGTGTA TGTATGTGTG TAGTGTGTGA TGTGGTGTGG TGTGGTGTGG TGTGTGTATG
  AGTATGTATG TGTGTAGTGT GTGATGTGGT GTGTGTATGT ATGTGTGTAG TGTGTGATGT
  GGTGTGTGTA TGTATGTGTG TAGGGGGAGA TTTTGGGTTT CTCTTTGCTG CTTCTGTGAT
  Y
  CAAGAGGTAT TTTGAGGAGG CTGGGATGAG CTCTGAAGGT CTCCCTGCCT GCCTGTAGCA
  GACGTTGTGC CAGTGATAAT AAGGAAAAGC ATCCAGCTCA TTCATATCCC CTCAGAGTAC
  ATAACCTCCC CTTCCCCCTG TTCTAGACCC CCCTACCATG CTCTATAAAG ACCCCCTAAC
  TTCTATATCC AATAAACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411351	NES15908572	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52478950					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411351	NES15908572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51916529 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	439 bp proximal
Rr576437	regulatory region 576437	1968 bp proximal
Tssr876	transcription start site region 876	98 bp downstream
Tssr33242	transcription start site region 33242	13 bp upstream
Tssr33243	transcription start site region 33243	25 bp downstream
Tssr33244	transcription start site region 33244	61 bp downstream
Tssr33245	transcription start site region 33245	119 bp downstream