rs52476429 SNP Detail

Summary

• ID
  rs52476429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121947049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTCCAA AGGTCCTGAG TTCAAATCCC AGCAACCACA
  TGGTGGCTCA CAACCATCTG TAACAGGGTC TGATGCACTC TTCTAGTGTG TGTCTGAAGA
  Y
  AGCTACAGTG TATTCATAGT AATAAAATAA ATAAATCTTA AAAAAAGAAA AGACTATCAC
  TAATATGTAT GAGCCAGATC TGGTGACTCG ATAGCAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409303	ENSMUSSNP4747748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320487082	CHEV_2_121942304	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52476429					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121947049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75635	predicted gene, 75635			1967 bp upstream
Rr373779	regulatory region 373779			828 bp upstream
Rr563908	regulatory region 563908			1808 bp proximal
Rr563909	regulatory region 563909			1978 bp proximal
Spg11	SPG11, spatacsin vesicle trafficking associated			Intron
				Noncoding-Transcript-Variant
Tssr19802	transcription start site region 19802			356 bp upstream
Tssr19803	transcription start site region 19803			1971 bp upstream
Tssr25950	transcription start site region 25950			1749 bp downstream
Tssr25951	transcription start site region 25951			1796 bp downstream