rs52476215 SNP Detail

Summary

• ID
  rs52476215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28779442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA GTTTACTCAC TGAGATGGGA
  M
  ACTATAGTGT GTGTGTGTGT GTGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134715779	ENSMUSSNP2269465	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320690997	CHEV_3_28624215	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52476215					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28779442 () rs orientation: forward

Symbol	Name	Function Class
1700112D23Rik	RIKEN cDNA 1700112D23 gene	within coordinates
Rr574625	regulatory region 574625	1540 bp distal
Rr574626	regulatory region 574626	within coordinates
Rr574627	regulatory region 574627	1864 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	Intron