rs52474967 SNP Detail

Summary

• ID
  rs52474967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGTGGT GCAGTGCTAA
  GGGCTTGTGG CTTTTGGAAC CTCTAAACCT ATTCCAGGAA GCTCACACCT TCTCAGTCTC
  CGCAGACAGC CACCCACGGC ATCGAGTATT CAAATGCCAA AGGCTTATGG GATATATCTT
  ACTCAAACGG CCACAATGTG TGTGTGTGTG TGTACACGTG TGTGTGTGTG CATGTGCATG
  Y
  GTGTGTGCCT GCTTGAATTT CTGTGTACCG CATGCGTGCA GGAACCTAAG GAGGCCAGAA
  AAGGGCATCA AATCTCTTAG ACTTGGAATT ACAAGTGTTT GTGAGCCGCC AAGTGGCTGC
  TGGGAAACTA ACTCAGGTCC TCTACGGATT CTGGGAAACA CTCTCAGCTG CTCTTCAAGA
  GCATCAAGTG CTCTTAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136102539	ENSMUSSNP4314077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52474967					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048850 () rs orientation: forward

Symbol	Name	Function Class
Rr587533	regulatory region 587533	within coordinates