rs52470299 SNP Detail

Summary

• ID
  rs52470299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121992990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC AGGGTCTCTC TCAGCTCTTG
  Y
  TGTCTTGGAA TTCGATATGT AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147410397	ENSMUSSNP565866	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320487282	CHEV_2_121988245	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52470299					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121992990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			within coordinates
Rr563917	regulatory region 563917			1799 bp distal
Rr563918	regulatory region 563918			1499 bp distal
Rr563919	regulatory region 563919			1631 bp distal
Rr563920	regulatory region 563920			598 bp distal
Rr563921	regulatory region 563921			1071 bp proximal
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant
Tssr626	transcription start site region 626			1812 bp downstream
Tssr19830	transcription start site region 19830			1816 bp downstream
Tssr19831	transcription start site region 19831			1772 bp downstream
Tssr19832	transcription start site region 19832			950 bp downstream