rs52469284 SNP Detail

Summary

• ID
  rs52469284
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCTCTGG CCAAGTGGCC CCTGTTTCTC AGGTGATGAG
  ACCTGGAGAA GCGTGCAGAG CTGAAATTCC CTGAGAGAAA GAGAGACAGA GACACACACA
  S
  AGAGAGAGAG ACACACACAG AGAGAGAGAC AGAGAGAGAC AGAGAGAGAG ACTAGGTAGT
  GGGGAACTGA GCTCAGCCAC ATAGGGAGTT CTTTGAAGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146245226	ENSMUSSNP806496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321099689	CHEV_4_43994548	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52469284					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981676 () rs orientation: forward

Symbol	Name	Function Class
Ccin	calicin	1807 bp upstream
Rr398234	regulatory region 398234	817 bp upstream
Rr591125	regulatory region 591125	1434 bp distal
Rr591126	regulatory region 591126	396 bp proximal
Rr591127	regulatory region 591127	893 bp proximal
Tssr37010	transcription start site region 37010	1797 bp upstream
Tssr37011	transcription start site region 37011	1820 bp upstream