rs52468141 SNP Detail

Summary

• ID
  rs52468141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121405267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGGCTC TGGTTCTGAG
  GAGCTCTGGT TCTGAGGGGG CTCTGGCTCT GAGGGGCTCT GAGGGGGCTC CGACTCTGAG
  GGGCTCCGGC TCTGAGGGGG CTCCGGCTCT GAGGGGGCTC CGGCTCTGAG GGGACTCCGG
  CTCTGAGGAG GCTCCGGCTC TGAGAGGGCT CTGGCTCTGA GGGGCTCTGG CTCTGAGGAG
  Y
  TCTGGTTCTG AGGGGGCTCT GGCTCTGAGG GGCTCTGAGG GGGCTCCGAC TCTGAGGGGC
  TCCGGCTCTG AGGGGGCTCC GGCTCTGAGA GGGCTTCGAC TCTGAGGGGG CTCTGGCTCT
  GAGGGGCTCT GGCTCTGAGG GGGCTCTGGC TCTGGGGGGC TCCGATTCTG AAGGGGCTCT
  GACTCTGAGG GGGCCGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320483869	CHEV_2_121400522	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52468141					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121405267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr373770	regulatory region 373770			1246 bp upstream
Rr563854	regulatory region 563854			195 bp distal
Rr563855	regulatory region 563855			974 bp proximal