rs52466557 SNP Detail

Summary

• ID
  rs52466557
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138453647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTGAGGTG CTTCCCAACC ACAGCCACAC ACACGCACAC
  ACGCACACAC ACGCGCGCGC GCACACACAC ACATACACAC ACACACACAC ATACACACAC
  W
  CTCTCCCCCT CCCTAGGCCC AATATCCTTG CTTCTGTTGA AACCTTGACT TAAATGAAGA
  CTCTTCCCTA GTTTAGCCTG TCCCTTCACT TGCCCAATTC C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147655308	ENSMUSSNP2425949	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52466557					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138453647 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr602998	regulatory region 602998	1992 bp distal
Rr602999	regulatory region 602999	1534 bp distal
Rr603000	regulatory region 603000	1001 bp distal
Rr603001	regulatory region 603001	749 bp distal
Rr603002	regulatory region 603002	49 bp distal
Tssr39875	transcription start site region 39875	1027 bp downstream
Tssr44173	transcription start site region 44173	1078 bp upstream
Tssr44174	transcription start site region 44174	1069 bp upstream
Ubxn10	UBX domain protein 10	Intron