rs52464111 SNP Detail

Summary

• ID
  rs52464111
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148144122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGC GCGCACGTGC GTGTGCACAC
  G
  CCTATGGAAG CCAGAACAGG CCATT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147990989	ENSMUSSNP6055527	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321416742	CHEV_4_147433774	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52464111					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148144122 () rs orientation: forward

Symbol	Name	Function Class
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Mthfr	methylenetetrahydrofolate reductase	114 bp downstream
Rr604567	regulatory region 604567	1917 bp distal
Rr604568	regulatory region 604568	250 bp distal
Rr604569	regulatory region 604569	558 bp proximal
Rr604570	regulatory region 604570	852 bp proximal
Rr604571	regulatory region 604571	1257 bp proximal