rs52463049 SNP Detail

Summary

• ID
  rs52463049
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116112423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TAGTTCAGAC AGGTCACTCT TCAGAGAGAA CAAAGTTTTG
  CTCAATAGCA ACTGTCAAAA GGGAGATTTG AAGGAGGCTG TGTGAGTGAG TGAGTGAGTG
  W
  GTGAGTGAGT GTGTGTGTGT GTGTGTGTGT GTGTGTTGTG TACCTGTAAT TCTAGCTCTC
  AGGAGACTAA CACAGGAAGA TGGAGAGTTC AAGGTCAATC T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133574986	ENSMUSSNP758664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52463049					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116112423 () rs orientation: forward

Symbol	Name	Function Class
Gm66805	predicted gene, 66805	1958 bp upstream
Rr637158	regulatory region 637158	535 bp proximal
Rr637159	regulatory region 637159	662 bp proximal
Rr637160	regulatory region 637160	952 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr58351	transcription start site region 58351	1955 bp upstream
Tssr62558	transcription start site region 62558	1569 bp upstream
Tssr62559	transcription start site region 62559	1554 bp upstream