rs52461044 SNP Detail

Summary

• ID
  rs52461044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71697446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA AATAAAACAA AAACAGTTTC
  Y
  CCTAAAACAA ATCCTGATCC ATAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146751460	ENSMUSSNP162214	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320340933	CHEV_2_71705159	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52461044					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71697446 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	within coordinates
Gm75575	predicted gene, 75575	1378 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	864 bp distal
Rr558853	regulatory region 558853	within coordinates
Rr558854	regulatory region 558854	440 bp proximal
Tssr18292	transcription start site region 18292	970 bp downstream
Tssr18293	transcription start site region 18293	652 bp upstream
Tssr18294	transcription start site region 18294	1405 bp upstream
Tssr18295	transcription start site region 18295	1412 bp upstream
Tssr24499	transcription start site region 24499	449 bp downstream
Tssr24500	transcription start site region 24500	1204 bp downstream