rs52459650 SNP Detail

Summary

• ID
  rs52459650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101270107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTGTGT CCTCGGGCCT
  GATCAGCCTA CGTGCTTGAA ACTTGTTCTG TGTCATTTAA TTGTATCATC TATCCGTCTC
  CCTATTCGTC AGCAGATTGA AGATTGGCTA TTTTGAAGTT TATCTCCCCC AGTGCAAGTC
  CCCACTCATA CCCAGCTTGC ATCAAGAATG CTCATGGTTT TGTGACCAGA TTGTGAGGGG
  R
  TTTTGTTGTT GTCTGTTTGT TTTTGTTTGT TTGTTTGTTT TGTTGTTGTT TTGTTTTTTG
  TTTTTGAAAC AGAACTCTAT GGAGTCCCGA CAAATGGAGC TCAACTATGC AATGTGAGGC
  GGACCAATAC ATGCATGTTG TTAGCAGAGA ATTCTTCATC ACGTGTCCTT TCACGTGCCT
  GCTTAGGAGA GCATCCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135546811	ENSMUSSNP3306036	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52459650					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101270107 () rs orientation: forward

Symbol	Name	Function Class
Rr582021	regulatory region 582021	9 bp distal
Rr582022	regulatory region 582022	752 bp proximal